All the runtime errors are caused by the missing js files. Try moving the images again. Make a directory like images/fileman. Anywhere outside the cgi-bin should work. You will also need to edit the ConfigData.pm file. Look for a line like this:
Make sure that the url is pointing to where you moved the images. Let me know how that goes.
~Charlie
[edit]You beat me to it! I'm glad you got it working.[/edit]
Code:
'html_root_url' => 'http://www.domain.net/images/fileman',~Charlie
[edit]You beat me to it! I'm glad you got it working.[/edit]